Q1. Do you see any correlation between the areas with high RNA-Seq read coverage (high peaks) and the different boxes in the tra-R A isoform?

Q1.Do you see any correlation between the areas with high RNA-Seq read coverage (high peaks) and the different boxes in the tra-RA isoform?  Zoom out 10X to get an overview. (Remember that the thick boxes correspond to the coding regions, the thin boxes are the untranslated regions, and the lines with arrows are introns.)